Some fixes.

Fix and cleanup repack method for archives.
Fix setting up original mip count (now is a optional setting).
Fixed format and some settings being applied for multiple selected textures.

File_Format_Library/FileFormats/BFRES/BFRESGroupNode.cs

@@ -207,7 +207,7 @@ namespace Bfres.Structs
                                 else
                                 {
                                     var setting = FTEX.SetImporterSettings(file);
-                                    setting.MipCount = ftex.MipCount;
+                                    setting.MipCountOriginal = (int)ftex.MipCount;
                                     setting.Format = (GX2.GX2SurfaceFormat)FTEX.ConvertToGx2Format(ftex.Format);
                                     settings.Add(setting);
                                 }

File_Format_Library/FileFormats/BFRES/Bfres Structs/SubFiles/FTEX.cs

@@ -146,6 +146,7 @@ namespace Bfres.Structs
         {
             GTXImporterSettings setting = SetImporterSettings(image, FileName);
             setting.MipSwizzle = Tex2Swizzle;
+            setting.MipCountOriginal = (int)MipCount;
 
             GTXTextureImporter importer = new GTXTextureImporter();
             importer.LoadSetting(setting);

File_Format_Library/GUI/TextureUI/Importers/BNTX/BinaryTextureImporterList.cs

@@ -131,7 +131,7 @@ namespace FirstPlugin
         }
 
         private Thread Thread;
-        public void SetupSettings(TextureImporterSettings setting)
+        public void SetupSettings(TextureImporterSettings setting, bool setFormat = true)
         {
             if (setting.Format == SurfaceFormat.Invalid || SelectedIndex == -1)
                 return;
@@ -143,11 +143,11 @@ namespace FirstPlugin
             if (Thread != null && Thread.IsAlive)
                 Thread.Abort();
 
-            if (formatComboBox.SelectedItem is SurfaceDim)
+            if (formatComboBox.SelectedItem is SurfaceDim && setFormat)
                 setting.SurfaceDim = (SurfaceDim)formatComboBox.SelectedItem;
 
 
-           if (formatComboBox.SelectedItem is SurfaceFormat)
+           if (formatComboBox.SelectedItem is SurfaceFormat && setFormat)
             {
                 setting.Format = (SurfaceFormat)formatComboBox.SelectedItem;
 
@@ -297,7 +297,7 @@ namespace FirstPlugin
                 else
                     settings[index].MipCount = 1;
 
-                SetupSettings(settings[index]);
+                SetupSettings(settings[index], false);
             }
         }
 
@@ -316,7 +316,7 @@ namespace FirstPlugin
         {
             if (formatComboBox.SelectedIndex > -1 && SelectedTexSettings != null)
             {
-                SetupSettings(SelectedTexSettings);
+                SetupSettings(SelectedTexSettings, false);
             }
         }
 
@@ -332,13 +332,13 @@ namespace FirstPlugin
             if (SelectedTexSettings != null)
             {
                 SelectedTexSettings.GammaFix = cnkGammaFix.Checked;
-                SetupSettings(SelectedTexSettings);
+                SetupSettings(SelectedTexSettings, false);
             }
         }
 
         private void chkMultiThreading_CheckedChanged(object sender, EventArgs e) {
             if (SelectedTexSettings != null) {
-                SetupSettings(SelectedTexSettings);
+                SetupSettings(SelectedTexSettings, false);
             }
         }
     }

Switch_Toolbox_Library/Helpers/TreeHelper.cs

@@ -142,49 +142,31 @@ namespace Toolbox.Library
             return filesExtracted.ToArray();
         }
 
+        /// <summary>
+        /// S
+        /// </summary>
+        /// <param name="directory"></param>
+        /// <returns></returns>
         public static List<Tuple<string, string>> ReadFiles(string directory)
         {
             var Files = new List<Tuple<string, string>>();
-            ProcessDirectory(directory, Files);
+            ProcessDirectory(directory, "", Files);
             return Files;
         }
 
-        private static void ProcessDirectory(string targetDirectory, List<Tuple<string, string>> FileList)
+        private static void ProcessDirectory(string targetDirectory, string directory,
+            List<Tuple<string, string>> FileList, string seperator = "/")
         {
-            var fileEntries = GetRelativePaths(targetDirectory);
+            //Combine the target and current directory to get the full path for searching
+            string folder = Path.Combine(targetDirectory, directory);
 
-            foreach (string fileName in fileEntries)
+            //Search sub directories. Remove target directory from path
-            {
+            foreach (string dir in Directory.GetDirectories(folder))
-                char[] sep = { '\\' };
+                ProcessDirectory(targetDirectory, dir.Replace($"{targetDirectory}\\", string.Empty), FileList);
-                string[] fn = fileName.Split(sep);
-                string tempf = "";
-                for (int i = 0; i < fn.Length; i++)
-                {
-                    tempf += fn[i];
-                    if (fn.Length > 2 && (i != fn.Length - 1))
-                    {
-                        tempf += "/";
-                    }
-                }
 
-                Console.WriteLine($"{tempf} {targetDirectory} {fileName}");
+            //Search files. Remove target directory from path
-
+            foreach (string file in Directory.GetFiles(folder))
-                FileList.Add(Tuple.Create(fileName, $"{targetDirectory}/{fileName}"));
+                FileList.Add(Tuple.Create($"{file.Replace($"{targetDirectory}\\", string.Empty)}".Replace("\\", seperator), file));
-            }
-
-            string[] subdirectoryEntries = Directory.GetDirectories(targetDirectory);
-            foreach (string subdirectory in subdirectoryEntries)
-                ProcessDirectory(subdirectory, FileList);
-        }
-
-        private static IEnumerable<string> GetRelativePaths(string root)
-        {
-            int rootLength = root.Length + (root[root.Length - 1] == '\\' ? 0 : 1);
-
-            foreach (string path in Directory.GetFiles(root, "*", SearchOption.AllDirectories))
-            {
-                yield return path.Remove(0, rootLength);
-            }
         }
 
         private static void CreateDirectoryIfExists(string Dir)